With the current AppArmor code running the AppArmor init script right
after mountall is the best solution.  A feature on the AppArmor wish
list is extremely early init.

The current plans are to have apparmor initialize as early as possible,
the security_initcall level instead of module_init level if apparmor is
builtin.  And whether builtin or the module was loaded in the initrd to
allow apparmor to load policy an initial policy out of the initrd.
Subsequent reloads of policy could be done and would come from the
standard profile storage.  This allows for AppArmor to do early init but
have minimal policy stored in the initrd.

-- 
Profiles not applied to running processes when AppArmor is started
https://bugs.launchpad.net/bugs/116624
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