I purged lightdm and used my computer with gdm, and the problem still
happened.  I originally had lightdm active and gdm installed.  Now that
the problem also happens with only gdm, I have purged gdm and am only
using lightdm.

A couple less concrete observations:

- the problem seems to happen more often if I have Thunderbird running

- the problem just now was triggered when I pressed my custom key
command Super-Shift-4 to take a screenshot.  The "save screenshot"
prompt window came up, and I then could no longer manipulate windows
with my mouse.

It seems to be triggered somehow by popup windows...

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https://bugs.launchpad.net/bugs/925743

Title:
  windows stop intermittently responding to mouse control

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