Well, i looked over the config file and seems pretty much the same,
although i just analyzed some 15-20 keys..i`m not an ubuntu literate, i
dont know where that command saves the actual file..

but i think that this is important: you have the settings in
profiles/unity/ while right now there i have almost nothing that seems
important.. instead, all those settings are in profiles/default...  in
profiles/unity/plugins i can only see that gnomecompatible stuff, as
seen in the picture..

maybe disabling and reenabling the animations plugin rearranges the
settings folders, migrating from unity to default folder and in doing so
fixing the bug?

** Attachment added: "compizconfig1.jpeg"
   
https://bugs.launchpad.net/ubuntu/+source/unity/+bug/940603/+attachment/2944605/+files/compizconfig1.jpeg

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https://bugs.launchpad.net/bugs/940603

Title:
  white box randomly shows up at top left corner blocking applications
  from using stuff under it

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