This was fixed in update-notifier 0.119ubuntu5. Changelog:
update-notifier (0.119ubuntu5) precise; urgency=low
* Make sure /usr/lib/update-notifier/package-data-downloader is called on
package configuration as well, since a trigger is not guaranteed to
happen if the triggering package is configured first. LP: #977178.
** Package changed: flashplugin-nonfree (Ubuntu) => update-notifier (Ubuntu)
** Changed in: update-notifier (Ubuntu)
Status: In Progress => Fix Released
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https://bugs.launchpad.net/bugs/977178
Title:
After upgrading to 12.04, flash doesn't seem to be installed to
Firefox even though the package is.
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