I originally installed 11.10 which then upgraded itself to whatever.
The data in those dirs was indeed custom data - as required by gedit - see: 
http://live.gnome.org/Gedit/NewLanguage
Fortunately, I could recover the missing files from elsewhere.

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https://bugs.launchpad.net/bugs/992430

Title:
  ubuntu update to 12.04 LTS wipes  ~/.local data

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