This bug was fixed in the package xserver-xorg-input-synaptics -
1.5.99.902-0ubuntu5.1

---------------
xserver-xorg-input-synaptics (1.5.99.902-0ubuntu5.1) precise-proposed; 
urgency=low

  * debian/patches/204_monotonicise_hw_timestamp.patch:
    - Cherry-pick patch from upstream to ensure the timestamps used when
      determining velocities are monotonic.  In certain circumstances the
      timestamps from hardware events can be less than the timestamps
      from the preceeding artificially-generated events.
      + Fixes occasional huge jumps in pointer position.
      + Fixes two-finger scrolling in GTK+3 windows (such as Nautilus and
        Evolution) failing some time after login. (LP: #982771)
  * debian/patches/205_end_touches_on_disable.patch:
    - Upstream patch to reset touch state on device disable.
      + Fixes touchpad not working after suspend on some MacBook models
        (LP: #968845)
 -- Christopher James Halse Rogers <r...@ubuntu.com>   Tue, 24 Apr 2012 
14:32:49 +1000

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https://bugs.launchpad.net/bugs/982771

Title:
  Scrolling stops working in GTK3 scrolled windows after some time

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