Public bug reported: During a rebuild test with default-jdk switched to openjdk-7 (as it is in quantal), a build failure was detected for biojava-live version 1.7.1-2build1.
See attached log for full build failure details. https://wiki.ubuntu.com/JavaTeam/Java7Default contains more details of how to diagnose and resolve these types of issues. This log snippet might also be of interest: BUILD SUCCESSFUL Total time: 0 seconds dh_clean debian/rules build dh_testdir find . -name "*.java" -o -name ReadMe -o -name "*.fa" -o -name "*.html" | xargs -r chmod 644 # circumvent Debian's difficulties with libjgrapht - deleting all usage of that library rm -rf src/org/biojavax/bio/phylo/io/nexus/ \ src/org/biojavax/bio/phylo/DistanceBasedTreeMethod.java \ src/org/biojavax/bio/phylo/ParsimonyTreeMethod.java # Add here commands to compile the package. ANT_OPTS="-Xms1024m -Xmx1024m" ant package-biojava Unable to locate tools.jar. Expected to find it in /usr/lib/jvm/java-6-openjdk-amd64/lib/tools.jar Buildfile: /«PKGBUILDDIR»/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-6-openjdk-amd64/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: [mkdir] Created dir: /«PKGBUILDDIR»/ant-build prepare-biojava: [mkdir] Created dir: /«PKGBUILDDIR»/ant-build/classes/biojava [mkdir] Created dir: /«PKGBUILDDIR»/ant-build/docs/biojava [mkdir] Created dir: /«PKGBUILDDIR»/ant-build/docs/check/biojava compile-biojava: [javac] /«PKGBUILDDIR»/build.xml:246: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds BUILD FAILED /«PKGBUILDDIR»/build.xml:246: Unable to find a javac compiler; com.sun.tools.javac.Main is not on the classpath. Perhaps JAVA_HOME does not point to the JDK. It is currently set to "/usr/lib/jvm/java-6-openjdk-amd64/jre" Total time: 0 seconds make: *** [build-stamp] Error 1 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20120604-0756 Finished ──────── E: Build failure (dpkg-buildpackage died) ** Affects: biojava-live (Ubuntu) Importance: Undecided Status: New ** Tags: amd64 auto ftbfs java7-ftbfs -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1009485 Title: biojava-live version 1.7.1-2build1 failed to build with openjdk-7 as default-jdk To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/biojava-live/+bug/1009485/+subscriptions -- ubuntu-bugs mailing list [email protected] https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
