the workaround worked for me only partially. I my case what could not be
deleted was /usr/lib/eclipse/eclipse. After the workaround, the upgrade
could be run successfully.

However, upon restarting eclipse, it wanted to create a /root/workspace.
Why as root - I had started eclipse as a regular user. So I reverted the
workaround with sudo chown -R root:root /usr/lib/eclipse, and then could
again start as user.

But after checking for updates again, several were found, but none could
be installed as it failed with the exception of: "File that was copied
to backup could not be deleted: /usr/lib/eclipse/epl-v10.html".

Going through the workaround again, I was able to do the upgrades, but
then eclipse had forgotten all about previously installed Android SDKs,
and upgrade attempt resulted in:

Error creating feature 
"file:/usr/lib/eclipse/features/org.eclipse.cvs_1.3.100.v20110520-0800-7B78FHl9VF7BD7KBM4GP9C/".
 
[/usr/lib/eclipse/features/org.eclipse.cvs_1.3.100.v20110520-0800-7B78FHl9VF7BD7KBM4GP9C/feature.xml
 (No such file or directory)]
/usr/lib/eclipse/features/org.eclipse.cvs_1.3.100.v20110520-0800-7B78FHl9VF7BD7KBM4GP9C/feature.xml
 (No such file or directory)

now my installation appears to be ruined completely.

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https://bugs.launchpad.net/bugs/980217

Title:
  error when running eclispe -> Help -> Check for updates

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