I guess I have run into the same problem.

Supporting Vex's opinion, indexing my account with around 3GB of
messages takes quite a long time, during which my laptop was indeed
unusable. In fact, I hardly could not work today because even a terminal
window responded painfully slow. Also, it is weird that there is no sign
on the GUI that a reindexing is going on, resulting in that the user
starts to spend his/her time looking around and googling what is going
on.

It should be considered to limit the CPU usage or renice (if possible)
the reindexing process, or at least mark on the GUI that some processing
is going on.

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https://bugs.launchpad.net/bugs/984801

Title:
  Thunderbird 11 has stupidly high idle CPU usage

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