I don't know about the rest of all the apps installing wrong, but Chrome
I figured out how to fix it. With Chrome in particular it seems it is an
error with Ubuntu Software Center's handling of .deb files. I was
disappointed when they pulled the Debian installer a few generations ago
in Ubuntu. I am not an avid Linux user, so I don't do command line where
avoidable. I downloaded the debi installer or something similar and
Synaptic's package manager. On my system the Ubuntu Software Center
would not uninstall Chrome, and said it was a terminal only application.
I used Synaptic to uninstall Chrome as I had the issues listed above. On
a fresh install installing chrome downloaded as .deb file and using the
Ubuntu software center.

Fix: Upon fresh install make your first install a Debian package
installer application. Either use debi installer (something like that
anyway) or use "debian-installer" on the Synaptic package manager.

This kind of issue really is disappointing on an "end user" version of
Linux especially, since flash will become Chrome only in the near
future. I don't know of any workaround yet for video streaming (which
seems will soon be Amazon only via Chrome only, and way too soon at
that), but your average "grandmother" as the Ubuntu documentation says
Ubuntu is simple enough for would not know that .deb files are not
handled very well. Perhaps most are, but not the one which is most
likely to be the most common new user download and install .deb file...

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https://bugs.launchpad.net/bugs/951929

Title:
  Unity launcher and Alt-Tab switcher missing entry for gnome-terminal

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