K, stupid me. This doesn't affect shorewall. My startup script is as follows.
# start the firewall
shorewall_start () {
  echo -n "Starting \"Shorewall firewall\": "
  wait_for_pppd
  $SRWL start >> $INITLOG 2>&1 && echo "done." || echo_notdone
  /usr/sbin/fetchipac -S
  return 0
}
 and so I was getting the error on startup.

-- 
parse_port undefined when using libipt_tcp.so directly
https://bugs.launchpad.net/bugs/122090
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