I'm now running the AMD64 version of Precise from the hard-disk, and
over several reboots, the GPU has been loading without any problems. It
looks like dropping the PAE version of the kernel fixed things for me. I
don't know if whatever was happening was due to the mismatch between the
32bit OS and 64bit chip, or if it's something in the 32 bit kernel
regardless of the hardware. All I can say is that I've managed to
resolve it on my machine. Thanks for your help talking me through
different ideas and narrowing this down.

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https://bugs.launchpad.net/bugs/1009312

Title:
  GPU loads unreliably, possible kernel timeout

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