E.g. cron is well known to not set $HOME by default: I'd agree that the root 
cause
for creating non-FHS /.rpmdb is due to $HOME not being set (and RPM patched
to use $HOME in essential/mandatory configuration like %_dbpath).

These issues are in a Debian patch to  RPM and needs to be addressed
within Debian/uBuntu.

If you wish rpm-4.9.1 "upstream" patched, then you need to use trac at
http://rpm.org.

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https://bugs.launchpad.net/bugs/1069350

Title:
  suspicious /.rpmdb root directory

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