The cause of this is a five-second timeout in indicator-appmenu before
it removes closed windows from its internal hash table. When an
application restarts within these five seconds and X assigns the app's
window the same xid, indicator-appmenu doesn't recognize it as a newly
started application. It still shows the menus from the old instance (it
has the menu model cashed), but action activations aren't send to the
new instance.

The five-second timeout was added due to bamf bug #718926. This has been
fixed since then, thus the timeout can be removed (see attached branch).

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https://bugs.launchpad.net/bugs/1075263

Title:
  Items of a menubar built from GMenu do not always work

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