I do not think it is specific to chrome, the bug reproduces with other
applications such as Document Viewer.

When I use the scroll wheel in gedit, if I have switched from another
application it often jumps somewhere distant in the document instead of
scrolling as it should.  As a workaround, I use the arrow keys to move
the cursor, which jumps the viewport position back to the cursor area so
I can scroll normally from there.  This is an annoying and persistent
problem.

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https://bugs.launchpad.net/bugs/1046988

Title:
  scroll wheel in gedit is affected by scrolling in other windows

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