Public bug reported:
I can run blastn with the option "-evalue +inf" and, with the default
output format, the program runs fine and prints out everything it finds
with e-values < infinity. However, with XML output ("-outfmt 5"), it
crashes because it refuses to represent an infinite double in its XML
format.
It should either output infinity for the parameter in the XML file, or
say explicitly that an infinite e-value can't be used in combination
with XML output.
ProblemType: Bug
DistroRelease: Ubuntu 12.04
Package: ncbi-blast+ (not installed)
ProcVersionSignature: Ubuntu 3.2.0-32.51-generic 3.2.30
Uname: Linux 3.2.0-32-generic x86_64
ApportVersion: 2.0.1-0ubuntu14
Architecture: amd64
Date: Wed Nov 28 15:56:14 2012
InstallationMedia: Ubuntu-Server 11.04 "Natty Narwhal" - Release amd64
(20110426)
ProcEnviron:
TERM=xterm-256color
PATH=(custom, no user)
LANG=en_US.UTF-8
SHELL=/bin/bash
SourcePackage: ncbi-blast+
UpgradeStatus: Upgraded to precise on 2012-05-31 (181 days ago)
** Affects: ncbi-blast+ (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug precise
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https://bugs.launchpad.net/bugs/1084298
Title:
blastn crashes when using XML output format with infinite max E-value
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