So the following worked for me: (Ubuntu 12.04)

Purge Samba install:

sudo apt-get remove --purge samba

(If Samba 4 is installed, make sure to sudo apt-get remove --purge
samba4 also.)

Apt Clean:

sudo apt-get autoremove
sudo apt-get autoclean

Update Repos:

sudo apt-get update

Reinstall Samba:

sudo apt-get install samba

Reload Samba configuration:

testparm /etc/samba/smb.conf

I didn't have to, but might also be a good idea to reload the samba services:
sudo services samba restart

This has gotten samba working correctly for me again.

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https://bugs.launchpad.net/bugs/988509

Title:
  setoption.pl is not executable

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