Noting that I had this problem too... and like wannabeelinux my mysql
datadir was non-default.

MySQL runs just fine pre-update (with some tweaking of the apparmor
directory access config), but it's possible that the upgrade script
assumes a datadir location. I have it simlinked to the default directory
for convenience, so it's possible that a test for /var/lib/mysql passes
even though the actual data is elsewhere (on another filesystem).

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https://bugs.launchpad.net/bugs/1075251

Title:
  package mysql-server-5.5 5.5.28-0ubuntu0.12.04.2 failed to
  install/upgrade: subprocess installed post-installation script
  returned error exit status 1

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