I have the same problem with Ubuntu 12.04, Kernel 3.2.0-39-generic-pae
on an Acer Aspire One 756.

Steps to reproduce:

1) Insert an SD card
2) dmesg says repeatedly: mmc0: Timeout waiting for hardware interrupt
3) rmmod tg3 -> nothing happens with the SD card
4) modprobe tg3 -> Gnome provides to open the media in file manager, which 
works fine now.
5) rmmod tg3 ->Cardreader is still functional

The type of SD card does not matter and it does not matter if an
ethernet cable is plugged.

dmesg output:

insert card:
[  409.712345] mmc0: Timeout waiting for hardware interrupt.
[  419.722227] mmc0: Timeout waiting for hardware interrupt.
[  429.732104] mmc0: Timeout waiting for hardware interrupt.
[  439.742025] mmc0: Timeout waiting for hardware interrupt.
[  443.841471] mmc0: Card removed during transfer!
[  443.841477] mmc0: Resetting controller.

rmmod tg3:
[  447.384229] tg3 0000:04:00.0: PME# enabled
[  447.384258] tg3 0000:04:00.0: wake-up capability enabled by ACPI
[  447.417401] tg3 0000:04:00.0: PCI INT A disabled

modprobe tg3:
[  475.816235] tg3.c:v3.121 (November 2, 2011)
[  475.819526] mmc0: new high speed SDHC card at address 0007
[  475.832068] tg3 0000:04:00.0: PCI INT A -> GSI 18 (level, low) -> IRQ 18
[  475.832129] tg3 0000:04:00.0: setting latency timer to 64
[  475.839493] mmcblk0: mmc0:0007 SD08G 7.48 GiB 
[  475.841628]  mmcblk0: p1
[  475.880672] tg3 0000:04:00.0: eth0: Tigon3 [partno(BCM57785) rev 57785100] 
(PCI Express) MAC address b8:88:e3:42:5d:df
[  475.880680] tg3 0000:04:00.0: eth0: attached PHY is 57765 (10/100/1000Base-T 
Ethernet) (WireSpeed[1], EEE[1])
[  475.880685] tg3 0000:04:00.0: eth0: RXcsums[1] LinkChgREG[0] MIirq[0] ASF[0] 
TSOcap[1]
[  475.880690] tg3 0000:04:00.0: eth0: dma_rwctrl[00000001] dma_mask[64-bit]
[  475.908963] udevd[2073]: renamed network interface eth0 to eth1
[  475.916412] tg3 0000:04:00.0: irq 44 for MSI/MSI-X
[  475.916426] tg3 0000:04:00.0: irq 45 for MSI/MSI-X
[  475.916437] tg3 0000:04:00.0: irq 46 for MSI/MSI-X
[  476.486620] ADDRCONF(NETDEV_UP): eth1: link is not ready
[  476.487582] ADDRCONF(NETDEV_UP): eth1: link is not ready

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https://bugs.launchpad.net/bugs/1067222

Title:
  14e4:16bc Built-in SD card reader on Acer Aspire One AS756
  intermittently operative

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