If you want to remove the message from motd without rebooting here is
the command to delete the file that has the problem message cached and
fully regenerate the motd:

sudo bash -c 'rm /var/lib/update-notifier/fsck-at-reboot && for file in
/etc/update-motd.d/*; do $file; done > /var/run/motd' && cat /etc/motd

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https://bugs.launchpad.net/bugs/692355

Title:
  fsck doesn't update system info on login

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