I had the same problem and it seems the `service hsqldb-server stop` fails only 
if the mode is WebServer.
My solution:
change /etc/hsqldb.conf mode from WebServer to Server
kill both processes Server and Websever using `kill -9 <pid>`
service hsqldb-server restart
apt-get purge hsqldb-server  #now it works!

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https://bugs.launchpad.net/bugs/1004230

Title:
  package hsqldb-server 1.8.0.10-9ubuntu2 failed to uninstall:
  subprocess installed pre-removal script returned error exit status 1

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