On the graphics side of things, your AMD/ATI Radeon Mobility HD 5650M
"Madison" may be getting too hot.  You can enable power management for
it by using one of the methods described at
http://xorg.freedesktop.org/wiki/RadeonFeature/#index3h2

The first two methods are only rudimentary but are available now.   The 3rd 
(dpm) method is much better and will debut in the upcoming 3.11 linux kernel.  
The first release candidate (3.11-rc1) of the 3.11 kernel should be available 
any day now at http://kernel.ubuntu.com/~kernel-ppa/mainline/ and instructions 
on how to install and uninstall it are available at 
https://wiki.ubuntu.com/Kernel/MainlineBuilds
Or you could wait and see whether the currently under development Ubuntu 13.10 
"Saucy Salamander" updates to the 3.11 kernel before it's final release on 17th 
October 2013.

If you do update to the 3.11 kernel, to use the dpm method you will need
to select it at boot by adding radeon.dpm=1 to your GRUB kernel boot
options as described at
https://help.ubuntu.com/community/Grub2/Troubleshooting#Editing_the_GRUB_2_Menu_During_Boot

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https://bugs.launchpad.net/bugs/990731

Title:
  Request: Scale back CPU and GPU to avoid notebook overheating

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