I have the same behaviour than comment #19. For some weird reason unity
plugin is being disabled from config in some updates (for me it happens
from libunity6 to libunity7 in Ubuntu Saucy Salamander).

I can enable again the unity panels installing compizconfig-settings-
manager (ccsm), but I try to figure out what exact files changes ccsm
for maybe use the right commands and avoid the GUI for do this each
time. So I fired with:

strace -eopen cssm

Then I see that the config files being touched after enable Unity plugin
are:

/run/user/1000/dconf/user
/home/username/.config/dconf/user
/home/username/.cache/compizconfig-1/unityshell.pb
/usr/share/compiz/unityshell.xml

So likely one of that files is being overwritten in package updating.
Also it makes sense the dconf trick because it maybes reset one of that
files.

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https://bugs.launchpad.net/bugs/1128348

Title:
  Unity starts without panels

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