I have a similar issue. I have a AMD A8 quad core laptop with 8gb RAM,
fresh install of Ubuntu 13.04. In my case, my primary drive is an SSD
and my secondary drive (also mounted in the laptop) is a standard HDD.
All the music is on the secondary HDD and it /is/ auto-mounted at boot.
Every time I start rhythmbox up, rhythmbox-metadata takes up 25% CPU
(100% of one core). This does not appear to be an issue with changing
files while rhythmbox is closed. It already loaded the entire collection
(6198 songs, 56.8gb) but still it takes 100% CPU. I did not have this
problem when I was using amarok on Kubuntu 12.10.

If it makes any difference, I have a symlink from /home/<username>/Music
on the SSD to /media/store/media/Music, which is the location of the
music on the HDD.

Please let me know if there is any additional information I can provide.

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https://bugs.launchpad.net/bugs/1168441

Title:
  rhyhtmbox: high cpu-usage when playing music from second hard drive

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