I have fixed it in konqueror by modifying the file association
application/x-java-jnlp-file : I've simply added as application entry
the command "javaws".

To do this graphically, open konqueror configuration panel (menu
Configuration -> configure konqueror), go to the section "File
associations", select the type "application/x-java-jnlp-file", then
select the tab "General" on the right and click on the button "Add"
beside the list of application (where the entry "Sun Java 6 Web Start"
should be listed). In the dialog box appeared, type "javaws" in the text
input field, and valid.

-- 
Java6 Web Start just opens the Java control panel instead of running the 
application
https://bugs.launchpad.net/bugs/84501
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