If the 'killing all remaining processes' step has failed, then you have
some processes on your system, not managed by upstart, that are either
deadlocked or are respawning and preventing themselves from being
killed.  In either case, upstart does the best it can to shut down
anyway, but when processes are misbehaving and trying to avoid shutting
down, this sometimes means an unclean filesystem.

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https://bugs.launchpad.net/bugs/1073568

Title:
  Reiserfs not terminating properly, results in 'trans replayed' at next
  boot.

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