I had the same problem as described in this bug and was able to fix it.
The problem was caused by corrupt *.desktop files in 
/usr/share/applications/... which contained binary data or other invalid 
content.
You can use 'sudo update-desktop-database -v' which files were processed 
correctly and which caused warnings.
I corrected the problematic *.desktop files using 'sudo aptitude reinstall 
<package>' and the problem was gone.

HTH,
Andreas

-- 
(update-desktop-database:12124): core dump
https://bugs.launchpad.net/bugs/106939
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