I tried some applications (synaptic included) that use gksu/gksudo and they are 
all showing an "enter your password to perform administrative tasks" prompt.
Is this the case for you as well?
What do you mean by "asking for the root password"?

** Changed in: gksu (Ubuntu)
       Status: New => Incomplete

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synaptic is asking root password and not user admin's
https://bugs.launchpad.net/bugs/133639
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