And suddenly BOINC is back in its old behavior. I don't think I changed
anything. At least I can't remember. Maybe there was reboot between time
it worked and when it stop working.

Now when I run this command (not sure this is good test):
$ sudo su boinc -c 'sh -c 'sleep 2;xprintidle > /mnt/Data/test.txt''

I always get very low numbers, meaning it's not IDLE.
As myself:
$ sh -c 'sleep 2;xprintidle > /mnt/Data/test.txt'

I have that 2s IDLE time.

So the code used now in boinc seems to work separately, but it doesn't
work in boinc. Why?

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https://bugs.launchpad.net/bugs/1274456

Title:
  BOINC is always suspended, if set to work when IDLE

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