Have you got any 3rd party security related software / antivirus
software installed that might be protecting the volume against
modifications?  If yes what happens if you turn it off?

Have you got any of the change tracking features enabled in Windows?  If
yes what happens if you turn them off?

Perhaps most importantly, would you be happy to create and send us
metadata images of the volume in question?  Probably most useful to have
a "post ntfs-3g write" and "post windows boot after ntfs-3g write".  We
can give you instructions how to gather the metadata images - note those
would expose the names of all your files/directories but none of the
content (except for metadata related files).

Best regards,

Anton

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https://bugs.launchpad.net/bugs/1280574

Title:
  Files modified on NTFS partition are seen as corrupted files in
  Windows

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