What it does is backs up the list of packages  you have installed, then
deletes everything, then installs the new os, then attempts to reinstall
the rest of the packages you had before.  If it was a different release,
then some packages may fail to reinstall.  You can ignore this warning.

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https://bugs.launchpad.net/bugs/1296071

Title:
  install over existing does not delete old - result in corrupt install

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