I agree with Vasilis' notice above. I've first noticed it on Firefox and
Thunderbird buts it happens for all windows.

When that option is enabled all is working well. But the reason I've
disabled it is that I don't want to see all the application in the
Switch beacuse most of them runs in the background and they don't have
top-panel tray icons.

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https://bugs.launchpad.net/bugs/1306550

Title:
  Wrong mouse-coordinates in the window after minimize/maximize of after
  return from  fullscreen

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