The feature is there, but apparently it is not easy enough to discover.
Please use "File/Save markings" and check the box "Select full state,
not only changes".

Feedback in how to improve the discoverability of this feature is very
welcome!

Thanks,
 Michael

** Changed in: synaptic (upstream)
       Status: Unconfirmed => Confirmed

** Also affects: synaptic (Ubuntu)
   Importance: Untriaged
       Status: Unconfirmed

** Changed in: synaptic (Ubuntu)
       Status: Unconfirmed => Confirmed

** Changed in: synaptic (Ubuntu)
   Importance: Untriaged => Wishlist

-- 
unable to export list of installed packages
https://launchpad.net/bugs/33065

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