Can you perform the above and confirm if it fixes it for you? Also, the 
cups-pdf policy has:
  #include <abstractions/nameservice>

and /etc/apparmor.d/abstractions/nameservice has:
  #include <abstractions/winbind>

and /etc/apparmor.d/abstractions/winbind has:
  /var/{lib,run}/samba/winbindd_privileged/pipe rw,

did you set the path for to /run/samba/winbindd/pipe or are you using
Ubuntu defaults?

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https://bugs.launchpad.net/bugs/1377239

Title:
  cups-pdf 2.6.1-9 not able to lookup domain user because apparmor
  profile

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