Hi. I also see this problem frequently--probably every time that updates
are available. I'm here because I saw it again this morning.

I leave the computer on overnight (since suspend doesn't work for me in
14.04) and when I arrive at work in the morning, System Update is often
running but won't appear. This morning when I clicked it, it switched to
another workspace, but no window. Clicked it again, and it switched back
to the first workspace, but still no window.

Since 14.04 decided to do away with the "Updates available" in the
"gear" menu, I don't even know how to launch system updates. There was a
context-menu option on the launcher icon for the updater, which offered
to install all available updates. I don't know if that would have
worked, because I always review the updates before installing.

I also have two monitors. Both are plugged in and turned on when I see
the problem. Of course, at night the monitors are turned off, and that
is when the updater usually gets launched. So perhaps it does have
something to do with a cable plugged in (one is HDMI, one is DVI) with
no attached monitor that is turned on.

What's worse is I that when I hit Win-R to launch the "run" menu and
type "software updater", it happily lists it as an option (but only with
the "gears" icon) and when I click it nothing happens. How is it that
it's not accessible via the "run" menu? I actually came across this bug
today because I couldn't figure out how to run the thing manually. I can
do "apt-get upgrade" from the command line and have some idea of what's
being installed, but not with the detail that the software updater
provides.

14.04 has some nice touches, but I sure miss how solid 12.04 was...

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https://bugs.launchpad.net/bugs/1003950

Title:
  launcher does not show minimized update manager while clicked

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