Note that the profile is sourced at the top of /usr/sbin/lightdm-
session, and the bottom of lightdm-session runs everything in
/etc/X11/Xsession.d. The final file is 99x11-common_start, which is exec
$STARTUP. Thus this never returns to the exec in lightdm-session. Since
99upstart (from upstart package, so pretty much always present) smashes
STARTUP to "init --user", the X session is actually started by upstart--
which does not pass through the environment so carefully established in
lightdm-session (see "Job environment" in init(5)).

Consensus on askubuntu ( http://askubuntu.com/search?q=profile.d ) seems
to be "a graphical login shell is not a login shell," which basically
requires the treatment of every new terminal window as a new "login
shell" if there's to be a rational environment in there. If this was
ever considered a bug, it appears to have reverted now.

I've been digging through this specifically on Xubuntu 14.04, but again,
the players involved seem to be pretty deep in the stack.

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https://bugs.launchpad.net/bugs/794315

Title:
  lightdm forgets to source /etc/profile and ~/.profile

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