I can confirm this Problem in Ubuntu Feisty checkinstall version 1.6.1
This very simple makefile-code tries to copy a dummy config file to
/etc/ci_test :
install:
mkdir -p /etc/ci_test
cp config /etc/ci_test
checkinstall fails on this makefile if not using the above mentioned
workaround.
Greetings
Florian
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DEFECT in checkinstall: abort due to missing file or directory
https://bugs.launchpad.net/bugs/78455
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