@Joseph: The only thing I am pretty sure of is that it did not happen in
Trusty. But that would not help to perform a kernel bisect.

I think that the it happens less often with 3.16.0-24 than with
3.16.0-25, but I have no real data because it happens
nondeterministically. On -24 it only seems to happen if the last suspend
was a short time (less than half an hour) ago, while it seems to work
mostly if last suspend is long ago. With 3.16.0-25 (from proposed
updates repository) it seems to work almost never, but some single times
it worked.

Btw. there are no freezes on wake-up, the only problem are unplanned
wake-ups.

BTW: Did the kernel team backport the new Thunderbolt behavior for Apple
devices from kernel 3.17?

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https://bugs.launchpad.net/bugs/1391476

Title:
  [MacBookPro11,1] Laptop wakes up while lid closed

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