I confirm on my gutsy system (current as of yesterday, Sept 12th).
Open up gnome-terminal and at the command prompt enter a non-existant command
such as:
lss
which yields
Unable to open binary database
/usr/share/command-not-found/programs.d/all-main.db: (22, 'Invalid argument')
... etc. ...
--
doesn't cope with db format transition
https://bugs.launchpad.net/bugs/133691
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