The way I read "man ntpd"  (on Debian wheezy), we could (should?) replace 
ntpdate by
"ntpd -q"; and if we are going to run ntpd then ntpdate is unnecessary anyway.
If we have (or are going to have) ntpd, then we should simply skip 
/etc/network/if-up.d/ntpdate;
seeing how that depends on NTPSERVERS in /etc/ntp.conf or somesuch, I do not 
see that
/etc/network/if-up.d/ntpdate is ever any use.

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https://bugs.launchpad.net/bugs/288905

Title:
  /etc/init.d/ntp doesnt use ntpdate to ensure clocks are aligned before
  starting server.

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