Thanks for taking your time to report this issue and help making Ubuntu
better.
I get the same error message when I attempt to run fastqc after
installing it. As you mention, it works after installing Java manually.
I have forwarded this bug report to Debian and attached a bug watch.
** Changed in: fastqc (Ubuntu)
Status: New => Confirmed
** Bug watch added: Debian Bug tracker #784057
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=784057
** Also affects: fastqc (Debian) via
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=784057
Importance: Unknown
Status: Unknown
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https://bugs.launchpad.net/bugs/1443437
Title:
fastqc package doesn't list java as a dependency
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