Wouldn't
    rkhunter --enable properties && rkhunter --propupd
as substitute for /usr/share/rkhunter/scripts/rkhupd.sh be a reasonable 
workaround?
It would run the database update only in case the concerned binaries were not 
manipulated in the meantime.

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https://bugs.launchpad.net/bugs/1451477

Title:
  /etc/apt/apt.conf.d/90rkhunter security loss

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