"I tend to think that we should take the pragmatic approach for now, and
remove the env variable initializing it (still giving the option to the
user to export it for applications he knows that works well with it)." I
wholeheartedly agree with this. Giving the user and/or developer the
choice is the best way forward.

The ideal situation would be that developers enable Jayatana in their
apps for their programs they know work well with it and if they don't
the user should be able to do it for them when they know the app works
fine.

If we want to make a really good experience for the average user, we
could always try and implement a white-listing system for Java apps in
Ubuntu (particularly for packaged Java apps)? I appreciate that might be
a bit of a fiddly work around though! :)

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https://bugs.launchpad.net/bugs/1441487

Title:
  Running any Java program produces messages in the terminal, while
  rendering many Java applications broken

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