I recently upgraded from 12.04 to 14.04 with Gnome (classic on 12.04 and 
FlashBack on 14.04) and I have the same issue than the others.
I can give you the ouputs you required.
1) echo $XDG_MENU_PREFIX
gnome-

2) cat /usr/share/applications/gnome-panel.desktop
[Desktop Entry]
Type=Application
Name=Panel
Comment=Launch other applications and provide various utilities to manage 
windows, show the time, etc.
Icon=gnome-panel
Exec=env XDG_MENU_PREFIX="gnome-flashback-" gnome-panel
Terminal=false
X-GNOME-Bugzilla-Bugzilla=GNOME
X-GNOME-Bugzilla-Product=gnome-panel
X-GNOME-Bugzilla-Component=general
X-GNOME-Bugzilla-Version=3.8.0
Categories=GNOME;GTK;System;Core;
OnlyShowIn=GNOME;Unity;
NoDisplay=true
X-GNOME-AutoRestart=true
X-GNOME-Autostart-Phase=Panel
X-GNOME-Provides=panel
X-Ubuntu-Gettext-Domain=gnome-panel-3.0

3)  find . -name "gnome-panel.desktop"
./.config/autostart/gnome-panel.desktop
./.local/share/applications/gnome-panel.desktop

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https://bugs.launchpad.net/bugs/1305348

Title:
  Can't edit drop down applications menus in Edubuntu Trusty flashback
  session

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/gnome-panel/+bug/1305348/+subscriptions

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