Yes I have the same issue* using Ubuntu 15.10 Flashback (Compiz).
* The Alt-F1 key does not open the (Applications) main menu.

Your work-around (below) did fix the problem for me though: -

$ grep -r "'<Super>s'" /usr/share/glib-2.0/schemas

# backup this file
$ sudo cp 
/usr/share/glib-2.0/schemas/org.gnome.desktop.wm.keybindings.gschema.xml 
/usr/share/glib-2.0/schemas/org.gnome.desktop.wm.keybindings.gschema.old

# Edit this file to remove <Super>s keybinding.
sudo nano 
/usr/share/glib-2.0/schemas/org.gnome.desktop.wm.keybindings.gschema.xml

# The old file contains the line
$ grep "'<Alt>F1'" 
/usr/share/glib-2.0/schemas/org.gnome.desktop.wm.keybindings.gschema.old
<default><![CDATA[['<Super>s','<Alt>F1']]]></default>

# The new file contains the line
$ grep "'<Alt>F1'" 
/usr/share/glib-2.0/schemas/org.gnome.desktop.wm.keybindings.gschema.xml
<default><![CDATA[['<Alt>F1']]]></default>

# Once I logged out and logged back in again the Alt-F1 shortcut for
(Applications) main menus now works again.

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https://bugs.launchpad.net/bugs/1448507

Title:
  Unable to open Applications menu placed on gnome-panel with Alt+F1
  shortcut in Vivid Vervet and Wily Werewolf

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