I was able to boot with the package/patch in your PPA.
root=PARTUUID=<PARTUUID>

$ cat /proc/cmdline 
BOOT_IMAGE=/EFI/BOOT/vmlinuz-4.3.0-8-generic boot=local 
earlycon=pl011,0x3ced1000 console=ttyAMA1 debug user_debug=31 loglevel=9 
uefi_debug e1000e.IntMode=1 pci=pcie_bus_safe acpi=force cpuidle.off=1 
usb-storage.delay_use=1 rootwait rw 
root=PARTUUID=81780AD9-068C-4A80-A795-56856973B8F9 rootfstype=ext4
ubuntu@bandera:~$

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https://bugs.launchpad.net/bugs/1548120

Title:
  [xenial][initramfs-tools] support uppercase and lowercase uuids

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