I did not have this issue with Ubuntu 14.04 but now I have it with 16.04
with the same hardware. Windows from the screen on the right move to the
screen on the left if the screen is locked for a while. I have one
screen on DVI and another on HDMI. Both are the same model (BenQ
GW2460). I have an Intel integrated GPU with Oibaf drivers.

$ xrandr
Screen 0: minimum 8 x 8, current 3840 x 1080, maximum 32767 x 32767
HDMI1 connected primary 1920x1080+0+0 (normal left inverted right x axis y 
axis) 531mm x 299mm
   1920x1080     60.00*+
   1680x1050     59.88  
   1600x900      60.00  
   1280x1024     75.02    60.02  
   1280x800      59.91  
   1152x864      75.00  
   1280x720      60.00  
   1024x768      75.08    60.00  
   832x624       74.55  
   800x600       75.00    60.32  
   640x480       75.00    60.00  
   720x400       70.08  
HDMI2 connected 1920x1080+1920+0 (normal left inverted right x axis y axis) 
531mm x 299mm
   1920x1080     60.00*+  50.00    59.94  
   1920x1080i    60.00    50.00    59.94  
   1680x1050     59.88  
   1600x900      60.00  
   1280x1024     75.02    60.02  
   1280x800      59.91  
   1152x864      75.00  
   1280x720      60.00    50.00    59.94  
   1024x768      75.08    60.00  
   832x624       74.55  
   800x600       75.00    60.32  
   720x576       50.00  
   720x576i      50.00  
   720x480       60.00    59.94  
   720x480i      60.00    59.94  
   640x480       75.00    60.00    59.94  
   720x400       70.08  
VGA1 disconnected (normal left inverted right x axis y axis)
VIRTUAL1 disconnected (normal left inverted right x axis y axis)

$ sudo dmidecode -t 2
# dmidecode 3.0
Getting SMBIOS data from sysfs.
SMBIOS 2.7 present.

Handle 0x0002, DMI type 2, 15 bytes
Base Board Information
        Manufacturer: Gigabyte Technology Co., Ltd.
        Product Name: H87-D3H-CF

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https://bugs.launchpad.net/bugs/1295267

Title:
  Windows change Monitor/Desktop after screen lock

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