I am also having this problem.  Same scenario:

1. Fresh install to 16.04.
2. Import public keys using menu in seahorse.
3. Keys do not appear in seahorse but can be listed using gpg –list-keys  (from 
gpg(1) )
4. Importing the keys from CLI with gpg2 (gpg2 –import-keys <file>) and the 
keys will appear in seahorse.

So it appears that the import function in seahorse is using gpg(1) but
the viewing of keys is pointing to gpg2.

I cannot confirm whether Evolution or Thunderbird sees keys as I do not
use them.

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https://bugs.launchpad.net/bugs/1577198

Title:
  Imported gpg keys do not show up in Seahorse 3.18.0

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