I have the same issue with two computers since I switched to 16.04.
No problem when I was on 15.10 or earlier.

Maybe related to this bug? https://bugs.launchpad.net/bugs/1271591

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https://bugs.launchpad.net/bugs/1411174

Title:
  "open in terminal" does not honour SSH_AUTH_SOCK and GPG_AGENT_INFO
  environment variables in Ubuntu 14.10

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