It's a limitation of the --initialize option used to create the database that 
it's very picky about what can be in datadir. It will ignore anything starting 
with a ., but for anything else it will fail (unless specified with 
--ignore-db-dir).
That's the reason we assume that if there's anything in datadir we shouldn't 
run database initialization.

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https://bugs.launchpad.net/bugs/1580794

Title:
  mysql-server-5.7 fails to install on box with separate /var/lib/mysql
  partition

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